{"id":4,"date":"2014-05-15T22:05:45","date_gmt":"2014-05-15T22:05:45","guid":{"rendered":"http:\/\/martinstrauch.com\/?page_id=4"},"modified":"2022-09-22T12:18:12","modified_gmt":"2022-09-22T12:18:12","slug":"publications","status":"publish","type":"page","link":"https:\/\/martinstrauch.com\/?page_id=4","title":{"rendered":"publications"},"content":{"rendered":"\n<h2>peer-reviewed papers<\/h2>\n<ul>\n<li style=\"list-style-type: none;\">\n<ul>\n<li style=\"text-align: justify;\">  Long Chen, Matthias Daub, Hans-Georg Luigs, Marcus Jansen, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Dorit Merhof: <em> &#8220;High-throughput phenotyping of nematode cysts&#8221;<\/em>, <br> <strong><a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fpls.2022.965254\/full\">Frontiers in Plant Science<\/a><\/strong>, Sec. Technical Advances in Plant Science, https:\/\/doi.org\/10.3389\/fpls.2022.965254, 2022\n<\/li>\n\n<li style=\"text-align: justify;\">  Long Chen, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>,\nMatthias Daub, Hans-Georg Luigs, Marcus Jansen, Dorit Merhof: <em> &#8220;Learning to Segment Fine Structures Under Image-Level Supervision With an Application to Nematode Segmentation&#8221;<\/em>, \n<br> <strong><a href=\"\">Engineering in Medicine and Biology Conference (EMBC)<\/a><\/strong>, Jul 11-15 2022, Glasgow, UK, <strong>IEEE<\/strong>, 2022\n<\/li>\n\n<li style=\"text-align: justify;\"> Zhilei Zhao, Jessica L. Zung, Annika Hinze, Alexis L. Kriete, Azwad Iqbal, Meg A. Younger, Benjamin J. Matthews, Dorit Merhof, Stephan Thiberge, Rickard Ignell, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Carolyn S. McBride: <em>&#8220;Mosquito brains encode unique features of human odour to drive host seeking&#8221;<\/em>, \n<br> <strong><a href=\"https:\/\/doi.org\/10.1038\/s41586-022-04675-4\">Nature<\/a><\/strong>, 605, pp. 706-712, 2022\n<\/li>\n\n<!--\n<li style=\"text-align: justify;\"> Long Chen, Matthias Daub, Hans-Georg Luigs, Marcus Jansen, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Dorit Merhof: <em>\"High-throughput Phenotyping of Nematode Cysts\"<\/em>, <br> \n<strong><a href=\"https:\/\/arxiv.org\/abs\/2110.07057\">arXiv<\/a><\/strong>, 2110.07057, preprint, 2021\n<\/li>\n-->\n\n<!--\n<li style=\"text-align: justify;\"> Zhilei Zhao, Jessica L. Zung, Alexis L. Kriete, Azwad Iqbal, Meg A. Younger, Benjamin J. Matthews, Dorit Merhof, Stephan Thiberge, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Carolyn S. McBride: <em>\"Chemical signatures of human odour generate a unique neural code in the brain of Aedes aegypti mosquitoes.\"<\/em>,\n<strong><a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2020.11.01.363861v1.full\">bioRxiv<\/a><\/strong>, https:\/\/doi.org\/10.1101\/2020.11.01.363861, preprint\n<\/li>\n-->\n<li style=\"text-align: justify;\"> Dimitrios Kapsokalyvas, Rodrigo Rosas, Rob Janssen, Jo Vanoevelen, Miranda Nabben, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Dorit Merhof, Marc van Zandvoort:\n<em>&#8220;Multiview deconvolution approximation multiphoton microscopy of tissues and zebrafish larvae&#8221;<\/em>, <br>\n<strong><a href=\"https:\/\/www.nature.com\/articles\/s41598-021-89566-w\">Scientific Reports<\/a><\/strong>, 11(10160), 2021<\/li>\n\n<li style=\"text-align: justify;\"> David Fleck, Lina Kenzler, Nadine Mundt, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Naofumi Uesaka, Robert Moosmann, Felicitas Bruentgens, Annika Missel, Artur Mayerhofer, Dorit Merhof, Jennifer Spehr and Marc Spehr:\n<em>&#8220;ATP activation of peritubular cells drives testicular sperm transport.&#8221;<\/em>,\n<br> <strong><a href=\"https:\/\/elifesciences.org\/articles\/62885\">eLife<\/a><\/strong>, 10:e62885, 2021<\/li>\n\n<li style=\"text-align: justify;\"> Michael Schleyer, Ali\u0107e Weiglein, Juliane Thoener, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Volker Hartenstein, Melisa Kantar Weigelt, Sarah Schuller, Timo Saumweber, Katharina Eichler, Astrid Rohwedder, Dorit Merhof, Marta Zlatic, Andreas S. Thum and Bertram Gerber:\n<em>&#8220;Identification of dopaminergic neurons that can both establish associative memory and acutely terminate its behavioral expression&#8221;<\/em>,<br>\n<strong><a href=\"https:\/\/doi.org\/10.1523\/JNEUROSCI.0290-20.2020\">Journal of Neuroscience<\/a><\/strong>, 40(31), pp. 5990-6006, 2020<\/li>\n\n<li style=\"text-align: justify;\">Long Chen, Weiwen Zhang, Yuli Wu, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Dorit Merhof:\n<em>&#8220;Semi-supervised Instance Segmentation with a Learned Shape Prior.&#8221;<\/em>,<br> \n<a href=\"https:\/\/link.springer.com\/chapter\/10.1007%2F978-3-030-61166-8_10\"><strong>MICCAI workshops on Interpretable and Annotation-Efficient Learning for Medical Image Computing: IMIMIC\/MIL3ID\/LABELS 2020<\/strong><\/a>, Oct 4-8 2020, Lima, Peru, LNCS vol. 12446, pp. 94-102,&nbsp; <strong>Springer<\/strong>, 2020<\/li>\n\n<li style=\"text-align: justify;\"> Long Chen, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Matthias Daub, Xiaochen Jiang, Marcus Jansen, Hans-Georg Luigs, Susanne Schultz-Kuhlmann, Stefan Kruessel and Dorit Merhof:\n<em>&#8220;A CNN Framework Based on Line Annotations for Detecting Nematodes in Microscopic Images&#8221;<\/em>,\n<br>\n<strong><a href=\"https:\/\/ieeexplore.ieee.org\/document\/9098465\">International Symposium on Biomedical Imaging (ISBI)<\/a><\/strong>, Apr 3-7 2020, Iowa City, USA, <strong>IEEE<\/strong>, pp. 508-512, 2020<\/li>\n\n<li style=\"text-align: justify;\"> <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Karl Kr\u00fcger, Latha Mukunda, Alja L\u00fcdke, Karl Kr\u00fcger, C. Giovanni Galizia, Dorit Merhof:\n<em>&#8220;Interpolating maps between neural response spaces for chemosensing with fruit fly antenna sensors&#8221;<\/em>, \n<br>\n<a href=\"https:\/\/ieeexplore.ieee.org\/document\/8941717\"><strong> International Conference on Bioinformatics and Bioengineering (BIBE)<\/strong><\/a>, Oct 28-30 2019, Athens, Greece, <strong>IEEE<\/strong>, 2019<\/li>\n\n<li style=\"text-align: justify;\"> Laura Hoppe Alvarez, Sabine Eisold, Rustam A. Gumerov, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Andrey A. Rudov, Pia Lenssen, Dorit Merhof, Igor I. Potemkin, Ulrich Simon, Dominik W\u00f6ll: <em>&#8220;Deformation of microgels at solid-liquid interfaces visualized in 3D&#8221;<\/em>, \n<br>\n<a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.nanolett.9b03688\"><strong> Nano Letters<\/strong><\/a>, 19(12), pp. 8862\u20138867, 2019<\/li>\n\n<li style=\"text-align: justify;\">Long Chen, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Dorit Merhof: <em>&#8220;Instance segmentation of biomedical images with an object-aware embedding learned with local constraints&#8221;<\/em>, <a href=\"https:\/\/link.springer.com\/chapter\/10.1007%2F978-3-030-32239-7_50\">\n<br>\n<strong>International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)<\/strong><\/a>, Oct 13-17 2019, Shenzen, China, LNCS vol. 11764, pp. 451-459,&nbsp; <strong>Springer<\/strong>, 2019<\/li>\n\n<li style=\"text-align: justify;\">Long Chen, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Matthias Daub, Marcus Jansen, Hans-Georg Luigs, Dorit Merhof: <em>&#8220;Instance segmentation of nematode cysts in microscopic images of soil samples&#8221;,\n<br>\n<\/em><a href=\"https:\/\/www.lfb.rwth-aachen.de\/wp-content\/plugins\/bibtex\/show_pdf.php?file=CHE19a.pdf\"><strong>Engineering in Medicine and Biology Conference (EMBC)<\/strong><\/a><em>, <\/em>Jul 23-27 2019, Berlin, Germany, pp. 5932-5936, <strong>IEEE<\/strong>, 2019<em><br><\/em><\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Latha Mukunda, Alja L\u00fcdke, C. Giovanni Galizia and Dorit Merhof: <em>&#8220;<\/em><em>Recovering a chemotopic feature space from a group of fruit fly antenna chemosensors&#8221;,\n<br>\n<\/em> <a href=\"https:\/\/www.lfb.rwth-aachen.de\/wp-content\/plugins\/bibtex\/show_pdf.php?file=STR18b.pdf\"><strong>International Conference on Bioinformatics and Bioengineering (BIBE)<\/strong><\/a>, Oct 29-31 2018, Taichung, Taiwan, <strong>IEEE<\/strong>, 2018<\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Volker Hartenstein, Ingrid Andrade, Albert Cardona, Dorit Merhof: <em>&#8220;Annotated dendrograms for neurons from the larval fruit fly brain&#8221;<\/em>, \n<br>\n<a href=\"https:\/\/www.lfb.rwth-aachen.de\/wp-content\/plugins\/bibtex\/show_pdf.php?file=STR18a.pdf\"><strong>Workshop on Visual Computing for Biology and Medicine (VCBM)<\/strong><\/a>, Sep 20-21 2018, Granada, Spain, <strong>EuroGraphics<\/strong>, 2018<\/li>\n\n<li style=\"text-align: justify;\">Sascha E.A. Muenzing, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, James W. Truman, Katja B\u00fchler, Andreas Thum, Dorit Merhof:<em> \u201clarvalign: Aligning gene expression patterns from the larval brain of Drosophila melanogaster\u201d<\/em>,\n<br>\n<strong><a href=\"https:\/\/link.springer.com\/article\/10.1007%2Fs12021-017-9349-6\" target=\"_blank\" rel=\"noopener noreferrer\">Neuroinformatics<\/a><\/strong>, 16(1), pp. 65-80, 2018<\/li>\n\n<li style=\"text-align: justify;\">Dominic Siedhoff<sup>1<\/sup>, <span style=\"text-decoration: underline;\">Martin Strauch<\/span><sup>1<\/sup>, Victoria Shpacovitch, Dorit Merhof: <em>\u201cUnsupervised Data Analysis for Virus Detection with a Surface Plasmon Resonance Sensor\u201d<\/em>, \n<br>\n<a href=\"http:\/\/www.lfb.rwth-aachen.de\/wp-content\/plugins\/bibtex\/show_pdf.php?file=SIE17a.pdf\" target=\"_blank\" rel=\"noopener noreferrer\"> <strong> International Conference on Image Processing Theory, Tools and Applications (IPTA)<\/strong><\/a>, Nov 28 &#8211; Dec 1 2017, Montr\u00e9al, Canada, pp. 1-6, <strong>IEEE<\/strong>, 2017 (<span style=\"color: #993366;\">best paper award<\/span>)<\/li>\n\n<li style=\"text-align: justify;\">Eugenio Martinelli, Alja L\u00fcdke, Piergiorgio Adamo, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Corrado Di Natale, C. Giovanni Galizia: <em>\u201cNormalizing brain activity across individuals using functional reference mapping\u201d<\/em>, \n<br>\n<strong><a href=\"https:\/\/www.nature.com\/articles\/s41598-017-16913-1\" target=\"_blank\" rel=\"noopener noreferrer\">Scientific Reports<\/a><\/strong>, 7 (17128), 2017<\/li>\n\n<li style=\"text-align: justify;\">Michael Gadermayr, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Barbara Mara Klinkhammer, Sonja Djudjaj, Peter Boor, Dorit Merhof: <em>\u201cDomain Adaptive Classification for Compensating Variability in Histopathological Whole Slide Images\u201d<\/em>, \n<br>\n<a href=\"http:\/\/link.springer.com\/chapter\/10.1007\/978-3-319-41501-7_69\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>International Conference on Image Analysis and Recognition (ICIAR)<\/strong><\/a>, Jul 13-15 2016, P\u00f3voa de Varzim, Portugal, LNCS 9730, pp. 616-622, <strong>Springer<\/strong>, 2016<\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Markus Rothermel, Matt Wachowiak, Dorit Merhof: <em>&#8220;Smoothness-constrained convex cone analysis for signal extraction from calcium imaging movies.&#8221;<\/em><em>,<\/em>\n<br>\n<a href=\"http:\/\/ieeexplore.ieee.org\/xpl\/articleDetails.jsp?reload=true&amp;arnumber=7493342\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>International Symposium on Biomedical Imaging (ISBI)<\/strong><\/a>, Apr 13-16 2016, Prague, Czech Republic, pp. 612-616, <strong>IEEE<\/strong>, 2016<\/li>\n\n<li style=\"text-align: justify;\">Eduardo Hatano, Ahmed M. Saveer, Felipe Borrero-Echeverry, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Ali Zakir, Marie Bengtsson, Bill Hansson, Rickard Ignell, Peter Anderson, Paul G. Becher, Peter Witzgall, Teun Dekker: \n<em>&#8220;A herbivore-induced plant volatile interferes with host plant and mate location in moths through suppression of olfactory signalling pathways.&#8221;<\/em>, \n<br>\n<strong><a href=\"http:\/\/www.biomedcentral.com\/1741-7007\/13\/75\" target=\"_blank\" rel=\"noopener noreferrer\">BMC Biology<\/a>,<\/strong> 13:75, 2015<\/li>\n\n<li style=\"text-align: justify;\">Jan Beran, Arno Weiersh\u00e4user, C. Giovanni Galizia, Julia Rein, Brian H. Smith, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>: <em>&#8220;On piecewise polynomial regression under general dependence conditions with an application to calcium-imaging data.&#8221;<\/em>, \n<br>\n<strong><a title=\"Sankhya Series B\" href=\"http:\/\/link.springer.com\/article\/10.1007%2Fs13571-013-0066-3\" target=\"_blank\" rel=\"noopener noreferrer\">Sankhya Series B<\/a><\/strong>, Springer, Volume 76, Issue 1, pp 49-81, 2014<\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span><sup>1<\/sup>, Alja L\u00fcdke<sup>1<\/sup>, Daniel M\u00fcnch<sup>1<\/sup>, Thomas Laudes, C. Giovanni Galizia, Eugenio Martinelli, Luca Lavra, Roberto Paolesse, Alessandra Ulivieri, Alexandro Catini, Rosamaria Capuano, Corrado Di Natale: <em>&#8220;More than apples and oranges &#8211; Detecting cancer with a fruit fly&#8217;s antenna.&#8221;<\/em>, \n<br>\n<a href=\"http:\/\/www.nature.com\/srep\/2014\/140106\/srep03576\/full\/srep03576.html?WT.ec_id=SREP-20140107\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>Scientific Reports<\/strong><\/a>, 4:3576, 2014&nbsp; \n<\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Clemens M\u00fcthing, Marc P. Broeg, Paul Szyszka, Daniel M\u00fcnch, Thomas Laudes, Oliver Deussen, C. Giovanni Galizia, Dorit Merhof: <em>&#8220;The looks of an odor &#8211; Visualising neural odor response patterns in real time.&#8221;<\/em>, \n<br>\n<strong><a title=\"BMC Bioinformatics\" href=\"http:\/\/www.biomedcentral.com\/1471-2105\/14\/S19\/S6\" target=\"_blank\" rel=\"noopener noreferrer\">BMC Bioinformatics<\/a>,<\/strong> 14(Suppl 19):S6, 2013 <span style=\"color: #993366;\">\n<\/span><\/li>\n\n<li style=\"text-align: justify;\">Julia Rein, Julie A. Mustard, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Brian H. Smith, C. Giovanni Galizia: <em>&#8220;Octopamine modulates activity of neural networks in the honey bee antennal lobe&#8221;<\/em>,\n<br>\n<a title=\"Journal of Comparative Physiology A\" href=\"http:\/\/link.springer.com\/article\/10.1007%2Fs00359-013-0805-y\" target=\"_blank\" rel=\"noopener noreferrer\"><strong> Journal of Comparative Physiology A<\/strong><\/a>, Vol 199:11, pp. 947-962, 2013<\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Julia Rein, Christian Lutz,&nbsp; C. Giovanni Galizia:<em><em> &#8220;Signal extraction from movies of honeybee brain activity by convex analysis: The ImageBee plugin for KNIME.&#8221;, \n<br>\n<\/em><\/em><strong><a title=\"BMC Bioinformatics\" href=\"http:\/\/www.biomedcentral.com\/1471-2105\/14\/S18\/S4\">BMC Bioinformatics<\/a><\/strong><em><em><strong>,<\/strong> 14(Suppl 18):S4, 2013<\/em><\/em><\/li>\n\n<li style=\"text-align: justify;\">Martin Strauch, Mathias Ditzen, C. Giovanni Galizia: <em>&#8220;Keeping their distance? Odor response patterns along the concentration range.&#8221;<\/em>, \n<br>\n<strong><a title=\"Frontiers in Systems Neuroscience\" href=\"http:\/\/journal.frontiersin.org\/Journal\/10.3389\/fnsys.2012.00071\/abstract\" target=\"_blank\" rel=\"noopener noreferrer\">Frontiers in Systems Neuroscience<\/a><\/strong>, 6:71, 2012<\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Marc P. Broeg, Clemens M\u00fcthing, Paul Szyszka, Oliver Deussen, C. Giovanni Galizia, Dorit Merhof: <em>&#8220;INCIDE the Brain of a Bee &#8211; Visualising Honeybee Brain Activity in Real Time by Semantic Segmentation.&#8221;<\/em>,&nbsp;\n<br>\n<a href=\"http:\/\/www.lfb.rwth-aachen.de\/bibtexupload\/pdf\/STR12a.pdf\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>Symposium on Biological Data Visualization (BioVis)<\/strong><\/a>, Oct 14-15 2012, Seattle, USA,&nbsp;pp. 17-24, <strong><a href=\"http:\/\/ieeexplore.ieee.org\/xpl\/articleDetails.jsp?arnumber=6378588\" target=\"_blank\" rel=\"noopener noreferrer\">IEEE<\/a><\/strong>, 2012 (<span style=\"color: #993366;\">&#8220;honorable mention&#8221; award<\/span>)<\/li>\n\n<li style=\"text-align: justify;\">Martin Strauch, Julia Rein, C. Giovanni Galizia:<em> &#8220;Signal extraction from movies of honeybee brain activity by convex analysis.&#8221;<\/em>, \n<br>\n<a href=\"http:\/\/neuro.uni-konstanz.de\/03team\/content\/pdfs\/convexcone-preprint.pdf\" target=\"_blank\" rel=\"noopener noreferrer\"> <strong>Int. Conf. on Computational Advances in Bio and Medical Sciences (ICCABS)<\/strong>,<\/a> Feb 23-25 2012, Las Vegas, USA,&nbsp; pp. 1-6, <strong>IEEE<\/strong>, 2012<\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, C. Giovanni \nGalizia: <em>&#8220;Fast PCA for processing calcium-imaging data from the brain of Drosophila melanogaster.&#8221;<\/em>,\n<br>\n<a href=\"http:\/\/kops.ub.uni-konstanz.de\/handle\/urn:nbn:de:bsz:352-177364\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>CIKM Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO)<\/strong><\/a>, Oct 24th 2011, Glasgow, Scotland, pp. 3-10, <strong>ACM<\/strong>, 2011<\/li>\n\n<li style=\"text-align: justify;\">C. Giovanni Galizia, Daniel M\u00fcnch, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Anja Nissler, Shouwen Ma: <em>&#8220;Integrating heterogeneous odor response data into a common response model: A DoOR to the complete olfactome.&#8221;<\/em>, <a href=\"http:\/\/chemse.oxfordjournals.org\/content\/35\/7\/551.long\" target=\"_blank\" rel=\"noopener noreferrer\">\n<br>\n<strong>Chemical Senses<\/strong><\/a>, volume 35, pp. 551-563, 2010 (<span style=\"color: #993366;\"><a href=\"http:\/\/chemse.oxfordjournals.org\/content\/35\/7\/local\/front-matter.pdf\" target=\"_blank\" rel=\"noopener noreferrer\"><span style=\"color: #993366;\">cover<\/span><\/a> <span style=\"color: #993366;\">of the september 2010 issue; <\/span><a href=\"http:\/\/chemse.oxfordjournals.org\/content\/35\/7\/541.full\" target=\"_blank\" rel=\"noopener noreferrer\"><span style=\"color: #993366;\">commentary article<\/span><\/a><span style=\"color: #993366;\">)<\/span><\/span><\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, C. Giovanni Galizia: <em>&#8220;Registration to a neuroanatomical reference atlas &#8211; identifying glomeruli in optical recordings of the honeybee brain.&#8221;<\/em>,\n<br>\n<strong><a href=\"http:\/\/kops.ub.uni-konstanz.de\/handle\/urn:nbn:de:bsz:352-opus-119471\" target=\"_blank\" rel=\"noopener noreferrer\">German Conference on Bioinformatics (GCB)<\/a><\/strong>, Sep 9-12 2008, Dresden, Germany, P-136, pp. 85-95, <strong>GI<\/strong>, 2008<\/li>\n\n<li style=\"text-align: justify;\">Jochen Supper, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Dierk Wanke, Klaus Harter, Andreas Zell: <em>&#8220;EDISA: Extracting biclusters from multiple time-series of gene-expression profiles.&#8221;,\n<br>\n<\/em><a href=\"http:\/\/www.biomedcentral.com\/1471-2105\/8\/334\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>BMC Bioinformatics<\/strong><\/a>, 8:334, 2007<\/li>\n\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Jochen Supper, Christian Spieth, Dierk Wanke, Joachim Kilian, Klaus Harter and Andreas Zell: <em>&#8220;A Two-Step Clustering for 3-D Gene Expression Data Reveals the Main Features of the Arabidopsis Stress Response.&#8221;,<\/em>\n<br>\n<a href=\"http:\/\/journal.imbio.de\/articles\/pdf\/jib-54.pdf\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>Journal of Integrative Bioinformatics<\/strong><\/a>, 4(1):54, 2007<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<h2>posters and talks<\/h2>\n<ul>\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Sascha E.A. Muenzing, James W. Truman, Katja B\u00fchler, Andreas S. Thum, Dorit Merhof: <em>&#8220;<\/em>larvalign<em>: software for aligning gene expression patterns to a standard CNS of the Drosophila larva.&#8221;<\/em>, poster abstract, <strong>11th FENS Forum of Neuroscience<\/strong>, 7-11 Jul 2018, Berlin, Germany<\/li>\n<li style=\"text-align: justify;\">Eduardo Hatano, Saveer Ahmed, Felipe Borrero-Echeverry, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Ali Zakir, Marie Bengtsson, Bill Hansson, Rickard Ignell, Peter Anderson, Paul Becher, Peter Witzgall, Teun Dekker: <em>&#8220;Something does not smell right: induced plant volatiles inhibit sensory input and behavioural output in insect herbivores.&#8221;<\/em>, poster abstract, <strong>24th Meeting of the European Chemoreception Research Organization<\/strong> (<strong>ECRO 2014<\/strong>), Dijon, France,&nbsp;Sep 10-13, 2014 (published in <a href=\"http:\/\/chemse.oxfordjournals.org\/content\/40\/3\/211.full\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>Chemical Senses <\/strong><\/a>, 40 (3): 211-297, 2015)<\/li>\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>: <em>&#8220;The Database of Odor Responses (DoOR) &#8211; Mapping the fruit fly&#8217;s odor space.&#8221;,<\/em> <span style=\"color: #000000;\">invited talk<\/span> at the <strong><a href=\"http:\/\/www.volkswagenstiftung.de\/nc\/veranstaltungen\/veranstdet\/article\/symposium-ueber-gerueche-mit-60-experten-und-einem-kuenstler.html\" target=\"_blank\" rel=\"noopener noreferrer\">International Workshop on Odor Spaces<\/a><\/strong>, Herrenhausen Palace, Hannover, Germany, Sep 4-7, 2013 (abstract published in: <strong><a href=\"http:\/\/link.springer.com\/article\/10.1186%2F2044-7248-3-S1-O21\" target=\"_blank\" rel=\"noopener noreferrer\">Flavour<\/a><\/strong> 3(Suppl 1):O21, 2014)<\/li>\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>: <a href=\"http:\/\/vizbi.org\/Videos\/71707562\" target=\"_blank\" rel=\"noopener noreferrer\"><em>&#8220;Visualising odors with insect brains.&#8221;<\/em><\/a>, <span style=\"color: #000000;\">invited talk<\/span> at the<strong> <a href=\"http:\/\/vizbi.org\/2013\/Speakers\/\" target=\"_blank\" rel=\"noopener noreferrer\">4th Int. Meeting on Visualizing Biological Data (VIZBI 2013)<\/a>,<\/strong> The Broad Institute, Cambridge, MA, USA, Mar 19-22, 2013<\/li>\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, C. Giovanni Galizia:<em> &#8220;ImageBee: A KNIME plugin for analysing calcium-imaging data from the honeybee antennal lobe.&#8221;<\/em>, <a href=\"http:\/\/cms.uni-konstanz.de\/dzg\/conference-program\/abstract-volume\/\" target=\"_blank\" rel=\"noopener noreferrer\">poster abstract<\/a>, <strong>105th Annual Meeting of the German Zoological Society (DZG)<\/strong>, University of Konstanz, Germany, Sep 21-24, 2012<\/li>\n<li style=\"text-align: justify;\">&nbsp;J. Henning Proske, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Ana F. Silbering, Fritjof Helmchen, C. Giovanni Galizia: <em>&#8220;Fast 3D 2-photon calcium imaging in the antennal lobe of Drosophila&#8221;<\/em>, <a href=\"http:\/\/www.focusonmicroscopy.org\/2011\/PDF\/130_Proske.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">poster abstract<\/a>, <strong>Focus on Microscopy (FOM)<\/strong>: 24th International Conference on 3D Image Processing in Microscopy, University of Konstanz, Germany, Apr 17-20, 2011<\/li>\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Julia Rein, C. Giovanni Galizia: <em>&#8220;Pattern mining in spontaneous background activity from the honeybee antennal lobe.&#8221;<\/em>, poster abstract,<strong> 5th Bernstein Conference for Computational Neuroscience<\/strong>, University of Frankfurt, Frankfurt am Main, Germany, Sep 30 &#8211; Oct 2, 2009, (published in: <a href=\"http:\/\/www.frontiersin.org\/10.3389\/conf.neuro.10.2009.14.160\/event_abstract\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>Front. Comput. Neurosci., <\/strong><span style=\"color: #000000;\">doi: 10.3389\/conf.neuro.10.2009.14.160<\/span><\/a>)<\/li>\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Christian Lutz, David Samuelson, C. Giovanni Galizia: <em>&#8220;Connecting insect brain imaging to data mining tools &#8211; a neuroimage extension for the KNIME platform.&#8221;<\/em>, poster abstract, <strong>2nd INCF congress on Neuroinformatics<\/strong>, Pilsen, Czech Republic, Sep 6-8, 2009, (published in: <a href=\"http:\/\/www.frontiersin.org\/10.3389\/conf.neuro.11.2009.08.020\/event_abstract\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>Front. Neur., <\/strong><span style=\"color: #000000;\">doi: 10.3389\/conf.neuro.11.2009.08.020<\/span><\/a>)<\/li>\n<li style=\"text-align: justify;\">Julia Rein, <span style=\"text-decoration: underline;\">Martin Strauch,<\/span> C. Giovanni Galizia: <em>&#8220;Novel techniques for the exploration of the honeybee antennal lobe.<\/em>&#8220;, <a href=\"https:\/\/www.nwg-goettingen.de\/2009\/upload\/file\/Proceedings_Goettingen2009.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">poster abstract<\/a>, <strong>8th Meeting of the German Neuroscience Society<\/strong>, G\u00f6ttingen, Germany, Mar 25-29, 2009<\/li>\n<li style=\"text-align: justify;\">Shouwen Ma, <span style=\"text-decoration: underline;\">Martin Strauch,<\/span> Daniel M\u00fcnch, C. Giovanni Galizia: <em>&#8220;DoOR &#8211; a Database of Odorant Responses.&#8221;<\/em>, <a href=\"https:\/\/www.nwg-goettingen.de\/2009\/upload\/file\/Proceedings_Goettingen2009.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">poster abstract<\/a>, <strong>8th Meeting of the German Neuroscience Society<\/strong>, G\u00f6ttingen, Germany, Mar 25-29, 2009<\/li>\n<li style=\"text-align: justify;\">Ina Klinke, Julia Rein, Michael Schmuker, <span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Thomas Nowotny, C. Giovanni Galizia, Randolf Menzel: <em>&#8220;The Bernstein Partner project &#8216;Olfactory Coding&#8217;: A joint effort to reveal the neural basis of olfaction.&#8221;<\/em>, poster abstract, <strong>4th Bernstein Symposium for Computational Neuroscience<\/strong>, Munich, Germany, Oct 8-10, 2008 (<a href=\"http:\/\/www.frontiersin.org\/community\/AbstractDetails.aspx?ABS_DOI=10.3389\/conf.neuro.10.2008.01.073&amp;eid=108&amp;sname=Bernstein_Symposium_2008\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>Front. Comput. Neurosci., <\/strong><span style=\"color: #000000;\">doi: 10.3389\/conf.neuro.10.2008.01.073<\/span><\/a>)<\/li>\n<li style=\"text-align: justify;\"><span style=\"text-decoration: underline;\">Martin Strauch<\/span>, Julia Rein, C. Giovanni Galizia: <em>&#8220;Towards understanding olfactory information processing in the antennal lobes of Apis mellifera.&#8221;,<\/em> <a href=\"http:\/\/citeseerx.ist.psu.edu\/viewdoc\/download;jsessionid=8C78B4D434102231D7ED68B762979355?doi=10.1.1.129.7909&amp;rep=rep1&amp;type=pdf\" target=\"_blank\" rel=\"noopener noreferrer\">poster abstract<\/a>, <strong>3rd Bernstein Symposium for Computational Neuroscience<\/strong>, University of G\u00f6ttingen, Germany, Sep 24-27, 2007<\/li>\n<\/ul>\n<h2>&nbsp;<\/h2>\n<h2>theses<\/h2>\n<ul>\n<li>Martin Strauch: <em><a href=\"http:\/\/kops.uni-konstanz.de\/handle\/123456789\/29539?locale-attribute=en\" target=\"_blank\" rel=\"noopener noreferrer\">&#8220;Column subset selection with applications to neuroimaging data.&#8221;<\/a><\/em>,<br>doctoral thesis in computer science, University of Konstanz, Germany, 2014<\/li>\n<li>Martin Strauch: <em><a href=\"https:\/\/www.researchgate.net\/publication\/228814217_Diplomarbeit_Identifying_Gene_Regulatory_Modules_in_Arabidopsis_thaliana?ev=prf_pub\" target=\"_blank\" rel=\"noopener noreferrer\">&#8220;Identifying gene regulatory modules in Arabidopsis thaliana.&#8221;<\/a><\/em>,<br>Diplomarbeit (equ. Masters thesis) in bioinformatics, University of T\u00fcbingen, Germany, 2006<\/li>\n<\/ul>\n<h2>software &amp; data<\/h2>\n<ul>\n<li><a href=\"http:\/\/tech.knime.org\/imagebee-analysing-imaging-data-from-the-honeybee-brain\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>ImageBee<\/strong><\/a> &#8211; a <a href=\"http:\/\/www.knime.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">KNIME<\/a> plugin for processing calcium imaging movies from insect brains<\/li>\n<li><a href=\"http:\/\/neuro.uni-konstanz.de\/DoOR\/default.html\" target=\"_blank\" rel=\"noopener noreferrer\"><strong>DoOR<\/strong><\/a> &#8211; a data repository for odor responses in <em>Drosophila melanogaster <\/em>(web interface &amp; R package)<\/li>\n<li><strong><a href=\"http:\/\/www.ra.cs.uni-tuebingen.de\/software\/EDISA\/\" target=\"_blank\" rel=\"noopener noreferrer\">EDISA<\/a><\/strong> &#8211; biclustering of gene expression time series data (web service &amp; Matlab code)<\/li>\n<\/ul>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>peer-reviewed papers Long Chen, Matthias Daub, Hans-Georg Luigs, Marcus Jansen, Martin Strauch, Dorit Merhof: &#8220;High-throughput phenotyping of nematode cysts&#8221;, Frontiers in Plant Science, Sec. Technical Advances in Plant Science, https:\/\/doi.org\/10.3389\/fpls.2022.965254, 2022 Long Chen, Martin Strauch, Matthias Daub, Hans-Georg Luigs, Marcus Jansen, Dorit Merhof: &#8220;Learning to Segment Fine Structures Under Image-Level Supervision With an Application to [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"templates\/full-width-page.php","meta":{"footnotes":""},"class_list":["post-4","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/martinstrauch.com\/index.php?rest_route=\/wp\/v2\/pages\/4","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/martinstrauch.com\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/martinstrauch.com\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/martinstrauch.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/martinstrauch.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=4"}],"version-history":[{"count":253,"href":"https:\/\/martinstrauch.com\/index.php?rest_route=\/wp\/v2\/pages\/4\/revisions"}],"predecessor-version":[{"id":772,"href":"https:\/\/martinstrauch.com\/index.php?rest_route=\/wp\/v2\/pages\/4\/revisions\/772"}],"wp:attachment":[{"href":"https:\/\/martinstrauch.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=4"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}